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Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g012573 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g056937 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g102767 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g07513 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11282 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g30236 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05715 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06166 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g06380 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07076 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Als_g07408 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18793 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19167 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19265 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30421 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30602 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08735 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g29464 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010264 | No alias | not classified & original description: CDS=1-2337 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0084.g038899 | VAC1, ECB2, ATECB2 | not classified & original description: CDS=1-2004 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0096.g043691 | No alias | not classified & original description: CDS=1-1776 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0131.g049164 | No alias | not classified & original description: CDS=1-2763 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0242.g059819 | No alias | not classified & original description: CDS=1-2853 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0250.g060258 | No alias | not classified & original description: CDS=1-1893 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0345.g065805 | No alias | not classified & original description: CDS=1-2679 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0469.g072874 | CRR22 | not classified & original description: CDS=1-1206 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s1399.g102577 | No alias | not classified & original description: CDS=1-951 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s2487.g111794 | No alias | not classified & original description: CDS=200-2266 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g05221 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g05283 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06407 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g19906 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29515 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g30014 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g35103 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g67244 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g67874 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75131 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75380 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g75405 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.01G085500.1 | CRR22, Ceric.01G085500 | not classified & original description: pacid=50592662... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.15G076300.1 | Ceric.15G076300 | not classified & original description: pacid=50639367... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.23G005700.1 | Ceric.23G005700 | not classified & original description: pacid=50611427... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.25G001500.1 | Ceric.25G001500 | not classified & original description: pacid=50593180... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G030400.1 | Ceric.26G030400 | not classified & original description: pacid=50599909... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.33G035100.1 | Ceric.33G035100 | not classified & original description: pacid=50606945... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.37G043200.1 | Ceric.37G043200 | not classified & original description: pacid=50616612... | 0.01 | OrthoFinder output from all 47 species | |
| Len_g20509 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g11913 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g13947 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g16778 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g32918 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g39106 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g14904 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g15176 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g26505 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g45899 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g48582 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g17001 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g18405 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Nbi_g25433 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pir_g02291 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g14955 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g29461 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03867 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g03944 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g63140 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0019.g007662 | CRR22 | not classified & original description: CDS=517-2514 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0112.g020807 | No alias | not classified & original description: CDS=1-3252 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g35287 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g04449 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g06220 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g14865 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g16921 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g26847 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09995 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g41079 | LPA66 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 256 | 302 |
| IPR002885 | Pentatricopeptide_repeat | 155 | 201 |
| IPR002885 | Pentatricopeptide_repeat | 230 | 251 |
| IPR002885 | Pentatricopeptide_repeat | 373 | 402 |
| IPR002885 | Pentatricopeptide_repeat | 487 | 514 |
| IPR002885 | Pentatricopeptide_repeat | 459 | 483 |
| IPR002885 | Pentatricopeptide_repeat | 624 | 650 |
| No external refs found! |