Dac_g12650 (SRCAP, PIE1, chr13)

Aliases : SRCAP, PIE1, chr13

Description : ATPase component *(PIE1) of SWR1 chromatin remodeling complex & original description: none

Gene families : OG0002986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g12650

Target	Alias	Description	ECC score	Gene Family Method
Dcu_g08326	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01033511001	SRCAP, PIE1, chr13	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.02	OrthoFinder output from all 47 species
LOC_Os02g46450.2	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
MA_424432g0010	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Mp7g15670.1	SRCAP, PIE1, chr13	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005513	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc03g063220.2.1	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
Spa_g09110	SRCAP, PIE1, chr13	ATPase component *(PIE1) of SWR1 chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Zm00001e015483_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.02	OrthoFinder output from all 47 species
Zm00001e023267_P001	SRCAP, PIE1,...	ATPase component PIE1 of SWR1 chromatin remodeling complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0003352	regulation of cilium movement	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032886	regulation of microtubule-based process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0060632	regulation of microtubule-based movement	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	682	794
IPR000330	SNF2_N	157	428

External Links

No external refs found!