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  5. Dac_g11503

Dac_g11503 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g11503

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00138540 LOP1, TRN1,... Protein TORNADO 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g14310 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18237 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030702 LOP1, TRN1 not classified & original description: CDS=40-3219 0.04 OrthoFinder output from all 47 species
Azfi_s0049.g030849 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Dac_g39298 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07406 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g08770.1 No alias Protein TORNADO 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g37194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 654 789
No external refs found!