Dac_g11405

Description : TruB-type tRNA pseudouridine synthase & original description: none

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g11405
Cluster	HCCA: Cluster_154

Target	Alias	Description	ECC score	Gene Family Method
Adi_g012222	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0051.g031272	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01032383001	No alias	RNA processing.RNA...	0.02	OrthoFinder output from all 47 species
Len_g31733	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Ore_g35846	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Pir_g02810	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Spa_g51764	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032819	TruB_C	483	526
IPR002501	PsdUridine_synth_N	332	482

External Links

No external refs found!