Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: none
Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00041p00123630 | evm_27.TU.AmTr_v1... | RNA processing.RNA quality control Exon Junction complex... | 0.02 | OrthoFinder output from all 47 species | |
Als_g03890 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g03621 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g06089 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Cre17.g729250 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g03185 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g07950 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01016353001 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | OrthoFinder output from all 47 species | |
Gb_41555 | No alias | component UPF2 of RNA quality control Exon Junction complex | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g42040.1 | LOC_Os02g42040 | component UPF2 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species | |
Ore_g06800 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g14884 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g04699 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0029.g010188 | No alias | component *(UPF2) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e015177_P002 | Zm00001e015177 | component UPF2 of RNA quality control Exon Junction complex | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e023044_P004 | Zm00001e023044 | component UPF2 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
CC | GO:0009360 | DNA polymerase III complex | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0018142 | protein-DNA covalent cross-linking | IEP | HCCA |
BP | GO:0018143 | nucleic acid-protein covalent cross-linking | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
CC | GO:0042575 | DNA polymerase complex | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
No external refs found! |