AMTR_s00077p00082680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.66

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-VAL transcription factor


Gene families : OG_01_0002264 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002264_tree ,
OG_02_0002646 (LandPlants) Phylogenetic Tree(s): OG_02_0002646_tree ,
OG_03_0002238 (SeedPlants) Phylogenetic Tree(s): OG_03_0002238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00082680
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030182001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Pp3c7_7990V3.1 No alias high-level expression of sugar-inducible gene 2 0.02 Archaeplastida
GSVIVT01030182001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants
Pp3c7_7990V3.1 No alias high-level expression of sugar-inducible gene 2 0.02 LandPlants
GSVIVT01030182001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011124 Znf_CW 583 626
IPR003340 B3_DNA-bd 323 423
No external refs found!