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  5. Dac_g06908

Dac_g06908 (PKR1, CHR4)


Aliases : PKR1, CHR4

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g06908

Target Alias Description ECC score Gene Family Method Actions
Adi_g011955 SYD, CHR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01971 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22693 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Aop_g13768 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aop_g25745 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048917 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0435.g069908 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.04 OrthoFinder output from all 47 species
Ceric.21G025000.1 CHR11, Ceric.21G025000 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ceric.36G015700.1 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.25 SYD, CHR3 Chromatin structure-remodeling complex protein SYD... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.10 ATCHR12 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.13 PKL, GYM, CHR6,... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Cre12.g508150 CHR11 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Ehy_g15984 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Mp3g15030.1 CHR17 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Msp_g13222 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04716 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g07635 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981 PKL, GYM, CHR6,... WRKY-type transcription factor & original description: CDS=1-4410 0.03 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g49524 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08468 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14271 PKL, GYM, CHR6,... CHD3-type chromaTin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Zm00001e005517_P002 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.04 OrthoFinder output from all 47 species
Zm00001e030969_P003 SYD, CHR3, Zm00001e030969 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
InterPro domains Description Start Stop
IPR009463 DUF1087 1435 1474
IPR023780 Chromo_domain 736 785
IPR019787 Znf_PHD-finger 330 373
IPR001005 SANT/Myb 1842 1889
IPR000330 SNF2_N 841 1116
IPR001650 Helicase_C 1141 1253
No external refs found!