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Description : nuclear-encoded organellar RNA polymerase *(NEP) & original description: none
Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dac_g06640 | |
| Cluster | HCCA: Cluster_120 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00006p00254180 | evm_27.TU.AmTr_v1... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00065p00022170 | PDE319, SCA3,... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
| AT2G24120 | PDE319, SCA3 | DNA/RNA polymerases superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g073918 | MGP3 | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g62343 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g72236 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.05G056000.1 | Ceric.05G056000 | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021493.49 | PDE319, SCA3 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
| Cre02.g075600 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g12005 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01036518001 | No alias | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_02899 | MGP3 | nuclear-encoded organellar RNA polymerase (NEP) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os09g07120.1 | LOC_Os09g07120 | nuclear-encoded organellar RNA polymerase (NEP) | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19690 | MGP3 | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0035.g011471 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g10286 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g26905 | No alias | nuclear-encoded organellar RNA polymerase *(NEP) &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e035572_P001 | MGP3, Zm00001e035572 | nuclear-encoded organellar RNA polymerase (NEP) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008235 | metalloexopeptidase activity | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0070006 | metalloaminopeptidase activity | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR029262 | RPOL_N | 362 | 678 |
| No external refs found! |