Zm00001d013081 (GRMZM2G099604)

Aliases : GRMZM2G099604

Description : 35.1.5 not ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 85 (OTP85)

Gene families : OG_01_0009732 (Gene family) Phylogenetic Tree(s): OG0009732_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d013081
Cluster HCCA cluster: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
GSVIVT01019975001 No alias 35.1.5 not ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os03g58100 Os03g0795200 35.1.5 not ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc05g013200.1.1 Solyc05g013200.1 35.1.5 not ontology.pentatricopeptide (PPR)... 0.06 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 298
IPR002885 Pentatricopeptide_repeat 404 430
IPR032867 DYW_dom 471 596
IPR002885 Pentatricopeptide_repeat 92 144
IPR002885 Pentatricopeptide_repeat 302 345
IPR002885 Pentatricopeptide_repeat 198 245
No external refs found!