Zm00001d013032


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases ADPG2. polygalacturonase abscission zone A. thaliana (PGAZAT)


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d013032
Cluster HCCA cluster: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.02 Gene family
AT5G44840 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01008062001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01017305001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01033362001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01038447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_17570g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d034551 GRMZM2G092746,... 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 120 464
No external refs found!