Zm00001d012810 (GRMZM2G144196)


Aliases : GRMZM2G144196

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d012810
Cluster HCCA cluster: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.02 Gene family
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.03 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
GSVIVT01025717001 No alias No description available 0.06 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.05 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
LOC_Os08g14450 Os08g0242800,... No description available 0.03 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Smo117159 PACid_15403291 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 7 64
IPR007630 RNA_pol_sigma70_r4 84 133
No external refs found!