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  5. LOC_Os07g15570.1

LOC_Os07g15570.1


Description : Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana (sp|o82363|pp203_arath : 341.0)


Gene families : OG_01_0021425 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000789 (LandPlants) Phylogenetic Tree(s): OG_02_0000789_tree ,
OG_03_0000692 (SeedPlants) Phylogenetic Tree(s): OG_03_0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g15570.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Zm00001e029450_P001 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.06 Archaeplastida
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
AT2G36730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT4G22760 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01004902001 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.06 LandPlants
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
LOC_Os08g06490.2 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.04 LandPlants
LOC_Os09g24640.1 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.04 LandPlants
MA_118590g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 LandPlants
MA_470679g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 LandPlants
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.02 LandPlants
Solyc02g094125.1.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.05 LandPlants
Solyc04g063270.2.1 No alias no hits & (original description: none) 0.06 LandPlants
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.02 LandPlants
Solyc10g006730.1.1 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.02 LandPlants
Zm00001e002394_P001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.06 LandPlants
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.05 LandPlants
Zm00001e029450_P001 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.08 LandPlants
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.09 LandPlants
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 SeedPlants
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT3G28660 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 SeedPlants
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT4G22760 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
GSVIVT01004902001 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.06 SeedPlants
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants
LOC_Os08g06490.2 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.04 SeedPlants
LOC_Os09g24640.1 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.04 SeedPlants
MA_470679g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 SeedPlants
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.04 SeedPlants
Solyc04g063270.2.1 No alias no hits & (original description: none) 0.06 SeedPlants
Solyc05g006800.2.1 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.02 SeedPlants
Solyc10g006730.1.1 No alias Pentatricopeptide repeat-containing protein At4g22760... 0.02 SeedPlants
Zm00001e002394_P001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.08 SeedPlants
Zm00001e029450_P001 No alias Pentatricopeptide repeat-containing protein At2g46050,... 0.17 SeedPlants
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.12 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 181 228
IPR002885 Pentatricopeptide_repeat 71 115
IPR002885 Pentatricopeptide_repeat 324 346
IPR002885 Pentatricopeptide_repeat 284 314
IPR002885 Pentatricopeptide_repeat 45 66
IPR002885 Pentatricopeptide_repeat 154 180
IPR002885 Pentatricopeptide_repeat 256 277
No external refs found!