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  5. Dac_g02908

Dac_g02908


Description : component *(SF3B1) of splicing factor 3B complex & original description: none


Gene families : OG0002634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g02908

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00210790 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Ala_g02669 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Als_g58968 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aob_g02393 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Aop_g36775 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Cba_g08997 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g04130 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Gb_12533 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_20157 No alias component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Len_g38026 No alias component *(SF3B1) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g04262 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Sam_g25156 No alias component *(SF3B1) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Tin_g02906 No alias component *(SF3B1) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 283 413
No external refs found!