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  5. Dac_g02148

Dac_g02148


Description : not classified & original description: none


Gene families : OG0000926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000926_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g02148
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00247540 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT2G03130 No alias Ribosomal protein L12/ ATP-dependent Clp protease... 0.02 OrthoFinder output from all 47 species
Als_g04130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008259 No alias not classified & original description: CDS=1-588 0.06 OrthoFinder output from all 47 species
Azfi_s0022.g016065 No alias not classified & original description: CDS=1-390 0.08 OrthoFinder output from all 47 species
Cba_g11519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G029000.1 Ceric.19G029000 not classified & original description: pacid=50576272... 0.03 OrthoFinder output from all 47 species
Ceric.34G065900.1 Ceric.34G065900 not classified & original description: pacid=50622739... 0.04 OrthoFinder output from all 47 species
Dac_g05009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007737001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_26365 No alias component mtRPL7/L12 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Lfl_g02770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00755 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015697 No alias component *(bL12m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g25874 No alias component *(bL12m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sam_g25875 No alias component *(bL12m) of large mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g27095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09130 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41346 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e025012_P001 Zm00001e025012 component mtRPL7/L12 of large ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 146 195
IPR013823 Ribosomal_L7/L12_C 214 280
No external refs found!