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  5. LOC_Os07g13540.1

LOC_Os07g13540.1


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 507.0)


Gene families : OG_01_0021291 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0015615 (LandPlants) Phylogenetic Tree(s): OG_02_0015615_tree ,
OG_03_0015319 (SeedPlants) Phylogenetic Tree(s): OG_03_0015319_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g13540.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Zm00001e033171_P001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 LandPlants
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 LandPlants
Zm00001e033171_P001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.12 LandPlants
GSVIVT01019116001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 SeedPlants
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 SeedPlants
Zm00001e033171_P001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.13 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 586 710
IPR002885 Pentatricopeptide_repeat 148 176
IPR002885 Pentatricopeptide_repeat 416 442
IPR002885 Pentatricopeptide_repeat 78 106
IPR002885 Pentatricopeptide_repeat 487 510
IPR002885 Pentatricopeptide_repeat 388 410
IPR002885 Pentatricopeptide_repeat 179 203
IPR002885 Pentatricopeptide_repeat 283 303
IPR002885 Pentatricopeptide_repeat 315 344
IPR002885 Pentatricopeptide_repeat 455 478
IPR002885 Pentatricopeptide_repeat 208 249
No external refs found!