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  5. Dac_g01686

Dac_g01686 (ATUPF3, UPF3)


Aliases : ATUPF3, UPF3

Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Dac_g01686

Target Alias Description ECC score Gene Family Method Actions
Aev_g21603 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g35424 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g29350 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g27966 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g38478 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cba_g59737 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ceric.07G016200.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.34G019900.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01023232001 ATUPF3, UPF3 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
MA_102917g0010 ATUPF3, UPF3 component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Msp_g47753 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 134 298
No external refs found!