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  5. Dac_g00930

Dac_g00930 (HCF173)


Aliases : HCF173

Description : protein involved in PS-II assembly *(HCF173) & original description: none


Gene families : OG0006399 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g00930

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00232880 HCF173,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.04 OrthoFinder output from all 47 species
Adi_g026392 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Aev_g02401 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Aob_g05244 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Aop_g05654 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.11 OrthoFinder output from all 47 species
Cba_g03951 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.08 OrthoFinder output from all 47 species
Ceric.24G028300.1 HCF173, Ceric.24G028300 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020830.55 HCF173 No description available 0.01 OrthoFinder output from all 47 species
Cre13.g578650 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Dcu_g01607 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Dde_g21297 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g25310 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01029443001 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Gb_02290 HCF173 HCF173 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
LOC_Os02g04510.1 HCF173, LOC_Os02g04510 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
LOC_Os06g49120.1 HCF173, LOC_Os06g49120 HCF173 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Len_g03320 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g12273 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
MA_21385g0010 HCF173 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g04800.1 HCF173 HCF173 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Msp_g10500 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.09 OrthoFinder output from all 47 species
Nbi_g01268 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Ore_g17922 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Pir_g20180 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g27564 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g16606 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Sam_g09334 No alias protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Smo183274 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc08g016080.3.1 HCF173, Solyc08g016080 HCF173 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Spa_g26192 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.11 OrthoFinder output from all 47 species
Tin_g01089 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013206_P002 HCF173, Zm00001e013206 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 304 404
IPR016040 NAD(P)-bd_dom 468 550
IPR016040 NAD(P)-bd_dom 161 237
No external refs found!