LOC_Os07g12320.1


Description : SSU processome assembly factor (SWA1)


Gene families : OG_01_0005878 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005878_tree ,
OG_02_0006928 (LandPlants) Phylogenetic Tree(s): OG_02_0006928_tree ,
OG_03_0008986 (SeedPlants) Phylogenetic Tree(s): OG_03_0008986_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g12320.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.04 Archaeplastida
Cre03.g196850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 Archaeplastida
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.04 Archaeplastida
Pp3c8_11620V3.1 No alias transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.12 Archaeplastida
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.2 Archaeplastida
AMTR_s00006p00242700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 LandPlants
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 LandPlants
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 LandPlants
Mp4g00830.1 No alias SSU processome assembly factor (SWA1) 0.04 LandPlants
Pp3c8_11620V3.1 No alias transducin family protein / WD-40 repeat family protein 0.06 LandPlants
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.12 LandPlants
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.19 LandPlants
AMTR_s00006p00242700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 SeedPlants
AT2G47990 EDA13, EDA19, SWA1 transducin family protein / WD-40 repeat family protein 0.03 SeedPlants
GSVIVT01011022001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 SeedPlants
Gb_10217 No alias SSU processome assembly factor (SWA1) 0.01 SeedPlants
Solyc05g010470.4.1 No alias no hits & (original description: none) 0.11 SeedPlants
Zm00001e033137_P001 No alias SSU processome assembly factor (SWA1) 0.19 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 187 210
IPR001680 WD40_repeat 222 251
IPR018983 U3_snoRNA-assocProt_15_C 385 526
No external refs found!