LOC_Os07g08710.1


Description : linker histone (H1)


Gene families : OG_01_0000491 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000491_tree ,
OG_02_0000417 (LandPlants) Phylogenetic Tree(s): OG_02_0000417_tree ,
OG_03_0000288 (SeedPlants) Phylogenetic Tree(s): OG_03_0000288_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g08710.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.06 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.03 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.11 Archaeplastida
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.04 Archaeplastida
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.04 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.09 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.05 Archaeplastida
Gb_06547 No alias linker histone (H1) 0.02 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.07 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.03 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.08 Archaeplastida
MA_5293931g0010 No alias No annotation 0.05 Archaeplastida
MA_5951905g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.03 Archaeplastida
MA_6251451g0010 No alias No annotation 0.06 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.03 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.06 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.07 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.09 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.09 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.09 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.1 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.06 Archaeplastida
Zm00001e032965_P005 No alias linker histone (H1) 0.03 Archaeplastida
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 LandPlants
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 LandPlants
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.04 LandPlants
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.02 LandPlants
Gb_02738 No alias linker histone (H1) 0.05 LandPlants
Gb_03348 No alias linker histone (H1) 0.03 LandPlants
Gb_06547 No alias linker histone (H1) 0.02 LandPlants
MA_102457g0010 No alias linker histone (H1) 0.07 LandPlants
MA_10436125g0010 No alias linker histone (H1) 0.02 LandPlants
MA_10436125g0020 No alias linker histone (H1) 0.03 LandPlants
MA_500183g0010 No alias linker histone (H1) 0.08 LandPlants
Mp6g03150.1 No alias linker histone (H1) 0.03 LandPlants
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.06 LandPlants
Solyc09g083380.4.1 No alias linker histone (H1) 0.09 LandPlants
Zm00001e006018_P006 No alias linker histone (H1) 0.09 LandPlants
Zm00001e007189_P001 No alias linker histone (H1) 0.06 LandPlants
Zm00001e011857_P001 No alias linker histone (H1) 0.09 LandPlants
Zm00001e011859_P001 No alias linker histone (H1) 0.05 LandPlants
Zm00001e032965_P005 No alias linker histone (H1) 0.03 LandPlants
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 SeedPlants
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 SeedPlants
AMTR_s00185p00055680 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 SeedPlants
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.04 SeedPlants
GSVIVT01018114001 No alias Chromatin organisation.histones.H1 linker histone 0.02 SeedPlants
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.02 SeedPlants
Gb_02738 No alias linker histone (H1) 0.05 SeedPlants
Gb_03348 No alias linker histone (H1) 0.03 SeedPlants
Gb_40199 No alias linker histone (H1) 0.02 SeedPlants
MA_102457g0010 No alias linker histone (H1) 0.07 SeedPlants
MA_10428525g0020 No alias linker histone (H1) 0.02 SeedPlants
MA_10436125g0020 No alias linker histone (H1) 0.03 SeedPlants
MA_500183g0010 No alias linker histone (H1) 0.08 SeedPlants
MA_5293931g0010 No alias No annotation 0.04 SeedPlants
MA_6251451g0010 No alias No annotation 0.06 SeedPlants
Solyc09g066100.3.1 No alias linker histone (H1) 0.04 SeedPlants
Solyc09g083380.4.1 No alias linker histone (H1) 0.09 SeedPlants
Zm00001e006018_P006 No alias linker histone (H1) 0.09 SeedPlants
Zm00001e007189_P001 No alias linker histone (H1) 0.06 SeedPlants
Zm00001e011857_P001 No alias linker histone (H1) 0.08 SeedPlants
Zm00001e011859_P001 No alias linker histone (H1) 0.05 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 76 143
No external refs found!