1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os07g07000.1

LOC_Os07g07000.1


Description : SYP1-group Qa-type SNARE component


Gene families : OG_01_0000372 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000372_tree ,
OG_02_0002991 (LandPlants) Phylogenetic Tree(s): OG_02_0002991_tree ,
OG_03_0004212 (SeedPlants) Phylogenetic Tree(s): OG_03_0004212_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g07000.1
Cluster HCCA: Cluster_342

Target Alias Description ECC score Gene Family Method Actions
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.03 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.03 Archaeplastida
Cre13.g588550 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
Smo25349 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
Solyc12g005580.2.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.09 Archaeplastida
Zm00001e032875_P002 No alias no hits & (original description: none) 0.14 Archaeplastida
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.02 LandPlants
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.09 LandPlants
Zm00001e032875_P002 No alias no hits & (original description: none) 0.14 LandPlants
GSVIVT01022480001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 SeedPlants
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.08 SeedPlants
Zm00001e032875_P002 No alias no hits & (original description: none) 0.1 SeedPlants

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 241 292
IPR006011 Syntaxin_N 34 239
No external refs found!