Zm00001d011953 (GRMZM2G116557)


Aliases : GRMZM2G116557

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. auxin response factor 2 (ARF2)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d011953
Cluster HCCA cluster: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.05 Gene family
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.03 Gene family
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.05 Gene family
GSVIVT01004942001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
GSVIVT01011008001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
GSVIVT01021553001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
GSVIVT01023149001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
GSVIVT01032251001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os04g36054 Os04g0442000 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os04g57610 Os04g0671900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
LOC_Os11g32110 Os11g0523800 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
MA_10431695g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc01g103050.3.1 Solyc01g103050.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc05g047460.3.1 Solyc05g047460.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Solyc06g075150.3.1 Solyc06g075150.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Solyc07g016180.3.1 Solyc07g016180.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc12g006340.2.1 Solyc12g006340.2 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d014690 GRMZM2G317900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.06 Gene family
Zm00001d032683 GRMZM2G153233 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d043922 GRMZM2G437460 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 737 777
IPR033389 AUX/IAA_dom 673 728
IPR010525 Auxin_resp 253 334
IPR003340 B3_DNA-bd 127 228
No external refs found!