LOC_Os07g05010.2


Description : transcription factor (bHLH). PIF red/far-red light perception transcriptional regulator


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g05010.2
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.02 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.07 Archaeplastida
Gb_12264 No alias transcription factor (bHLH) 0.04 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os03g56950.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e036408_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e038765_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
AT1G68240 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 LandPlants
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.05 LandPlants
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 LandPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.07 LandPlants
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Pp3c1_38820V3.1 No alias phytochrome interacting factor 3 0.01 LandPlants
Pp3c3_28970V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 LandPlants
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e036408_P003 No alias transcription factor (bHLH) 0.03 LandPlants
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 SeedPlants
AMTR_s00045p00141060 evm_27.TU.AmTr_v1... External stimuli response.light.red/far red light.PIF... 0.02 SeedPlants
AT1G68240 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 SeedPlants
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 SeedPlants
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.07 SeedPlants
Solyc07g043580.4.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 SeedPlants
Zm00001e006917_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.03 SeedPlants
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e036408_P003 No alias transcription factor (bHLH) 0.03 SeedPlants
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 233 279
No external refs found!