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  5. LOC_Os06g50890.1

LOC_Os06g50890.1


Description : Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana (sp|q84th4|sr45a_arath : 97.8)


Gene families : OG_01_0001100 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001100_tree ,
OG_02_0001443 (LandPlants) Phylogenetic Tree(s): OG_02_0001443_tree ,
OG_03_0001574 (SeedPlants) Phylogenetic Tree(s): OG_03_0001574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g50890.1
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00209460 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
GSVIVT01005197001 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
MA_112005g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_89416g0010 No alias Serine/arginine-rich splicing factor SR45a... 0.01 Archaeplastida
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.03 Archaeplastida
Pp3c18_16140V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc03g033310.4.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 Archaeplastida
Zm00001e013302_P002 No alias Serine/arginine-rich splicing factor SR45a... 0.07 Archaeplastida
AMTR_s00029p00209460 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SR45a... 0.02 LandPlants
GSVIVT01005197001 No alias Serine/arginine-rich splicing factor SR45a... 0.03 LandPlants
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.02 LandPlants
MA_89416g0010 No alias Serine/arginine-rich splicing factor SR45a... 0.01 LandPlants
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.03 LandPlants
Pp3c18_16140V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 LandPlants
Pp3c1_27480V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 LandPlants
Solyc03g033310.4.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 LandPlants
Zm00001e013302_P002 No alias Serine/arginine-rich splicing factor SR45a... 0.07 LandPlants
Zm00001e022330_P003 No alias Serine/arginine-rich splicing factor SR45a... 0.02 LandPlants
Zm00001e038514_P005 No alias no hits & (original description: none) 0.01 LandPlants
AMTR_s00029p00209460 evm_27.TU.AmTr_v1... Serine/arginine-rich splicing factor SR45a... 0.02 SeedPlants
GSVIVT01005197001 No alias Serine/arginine-rich splicing factor SR45a... 0.03 SeedPlants
Gb_20180 No alias Serine/arginine-rich splicing factor SR45a... 0.02 SeedPlants
MA_89416g0010 No alias Serine/arginine-rich splicing factor SR45a... 0.01 SeedPlants
Solyc03g033310.4.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 SeedPlants
Zm00001e013302_P002 No alias Serine/arginine-rich splicing factor SR45a... 0.06 SeedPlants
Zm00001e022330_P003 No alias Serine/arginine-rich splicing factor SR45a... 0.02 SeedPlants
Zm00001e038514_P005 No alias no hits & (original description: none) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 178
No external refs found!