LOC_Os06g50360.1

Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)

Gene families : OG_01_0004055 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004055_tree ,
OG_02_0004423 (LandPlants) Phylogenetic Tree(s): OG_02_0004423_tree ,
OG_03_0004106 (SeedPlants) Phylogenetic Tree(s): OG_03_0004106_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g50360.1
Cluster	HCCA: Cluster_186

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021318.52	No alias	RNA pseudouridine synthase 2, chloroplastic...	0.03	Archaeplastida
Gb_32015	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.07	Archaeplastida
Solyc04g081920.3.1	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.03	Archaeplastida
Zm00001e030166_P001	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.11	Archaeplastida
Gb_32015	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.07	LandPlants
Solyc04g081920.3.1	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.03	LandPlants
Zm00001e030166_P001	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.12	LandPlants
AT1G76050	No alias	Pseudouridine synthase family protein	0.02	SeedPlants
Gb_32015	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.07	SeedPlants
Solyc04g081920.3.1	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.03	SeedPlants
Zm00001e030166_P001	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.12	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	73	121
IPR006145	PsdUridine_synth_RsuA/RluA	148	344

External Links

No external refs found!