Zm00001d011156 (GRMZM2G338158)


Aliases : GRMZM2G338158

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0001610 (Gene family) Phylogenetic Tree(s): OG0001610_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d011156
Cluster HCCA cluster: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
AT3G26610 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G14650 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01013800001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01032447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
Smo78038 PACid_15418478 No description available 0.03 Gene family
Solyc07g015870.3.1 Solyc07g015870.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d044110 GRMZM2G037431 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 58 386
No external refs found!