AMTR_s00004p00111480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.91

Description : RNA processing.RNA decay.exosome complex.associated co-factors.RRP6L exoribonuclease


Gene families : OG_01_0001601 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001601_tree ,
OG_02_0003483 (LandPlants) Phylogenetic Tree(s): OG_02_0003483_tree ,
OG_03_0003566 (SeedPlants) Phylogenetic Tree(s): OG_03_0003566_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00111480
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
MA_10434071g0020 No alias Protein RRP6-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10434071g0020 No alias Protein RRP6-like 2 OS=Arabidopsis thaliana... 0.03 LandPlants
AT5G35910 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.01 SeedPlants
LOC_Os10g30100.1 No alias exoribonuclease (RRP6L) 0.01 SeedPlants
MA_10434071g0020 No alias Protein RRP6-like 2 OS=Arabidopsis thaliana... 0.03 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEA Interproscan
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012588 Exosome-assoc_fac_Rrp6_N 34 115
IPR002562 3'-5'_exonuclease_dom 256 422
IPR002121 HRDC_dom 476 542
No external refs found!