Zm00001d010714 (GRMZM2G096553, GRMZM2G173137)

Aliases : GRMZM2G096553, GRMZM2G173137

Description : 35.2 not assigned.unknown Pseudouridine synthase family protein

Gene families : OG_01_0003677 (Gene family) Phylogenetic Tree(s): OG0003677_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Zm00001d010714
Cluster	HCCA cluster: Cluster_286

Target	Alias	Description	ECC score	Gene Family Method
AT3G04820	No alias	Pseudouridine synthase family protein	0.03	Gene family
GSVIVT01021833001	No alias	35.2 not assigned.unknown Pseudouridine synthase family protein	0.06	Gene family
LOC_Os05g43374	Os05g0509300	35.2 not assigned.unknown Pseudouridine synthase family protein	0.04	Gene family
Smo439240	PACid_15422463	35.2 not assigned.unknown Pseudouridine synthase family...	0.03	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	InterProScan
MF	GO:0009982	pseudouridine synthase activity	IEA	InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001656	PsdUridine_synth_TruD	23	395

External Links

No external refs found!