AMTR_s00004p00109230 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.87

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-B component


Gene families : OG_01_0004360 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004360_tree ,
OG_02_0004546 (LandPlants) Phylogenetic Tree(s): OG_02_0004546_tree ,
OG_03_0006110 (SeedPlants) Phylogenetic Tree(s): OG_03_0006110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00109230
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021463.4 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 Archaeplastida
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 Archaeplastida
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 Archaeplastida
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 Archaeplastida
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 LandPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 LandPlants
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 LandPlants
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 LandPlants
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 LandPlants
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.02 SeedPlants
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 SeedPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.02 SeedPlants
Solyc01g094540.4.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 SeedPlants
Solyc05g049950.3.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 10 82
No external refs found!