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  5. LOC_Os06g40890.1

LOC_Os06g40890.1


Description : Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize : 469.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 274.2)


Gene families : OG_01_0000535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000535_tree ,
OG_02_0000281 (LandPlants) Phylogenetic Tree(s): OG_02_0000281_tree ,
OG_03_0000124 (SeedPlants) Phylogenetic Tree(s): OG_03_0000124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g40890.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.12 Archaeplastida
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.02 Archaeplastida
AMTR_s00019p00057300 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00019p00058670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 Archaeplastida
AMTR_s00019p00130680 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.02 Archaeplastida
AT1G02790 PGA4 polygalacturonase 4 0.04 Archaeplastida
AT3G07820 No alias Pectin lyase-like superfamily protein 0.14 Archaeplastida
AT5G48140 No alias Pectin lyase-like superfamily protein 0.08 Archaeplastida
GSVIVT01028044001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.12 Archaeplastida
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.07 Archaeplastida
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.09 Archaeplastida
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.05 Archaeplastida
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.11 Archaeplastida
LOC_Os02g10300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 Archaeplastida
LOC_Os06g35300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 Archaeplastida
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.06 Archaeplastida
LOC_Os06g35370.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
Solyc01g066070.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.13 Archaeplastida
Solyc06g009200.3.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.15 Archaeplastida
Solyc07g044870.4.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.03 Archaeplastida
Solyc12g006293.1.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.02 Archaeplastida
Solyc12g006313.1.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.02 Archaeplastida
Zm00001e002846_P002 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Zm00001e014066_P002 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
Zm00001e017747_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
Zm00001e022246_P002 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Zm00001e025021_P003 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.13 Archaeplastida
Zm00001e026354_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 Archaeplastida
Zm00001e030524_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 Archaeplastida
Zm00001e030528_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 Archaeplastida
Zm00001e030529_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.05 Archaeplastida
Zm00001e030530_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.06 Archaeplastida
Zm00001e030533_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
Zm00001e030534_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
Zm00001e030535_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
Zm00001e030537_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
Zm00001e042494_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 Archaeplastida
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.1 LandPlants
AMTR_s00019p00058670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 LandPlants
AT1G02790 PGA4 polygalacturonase 4 0.03 LandPlants
AT3G07820 No alias Pectin lyase-like superfamily protein 0.12 LandPlants
AT5G48140 No alias Pectin lyase-like superfamily protein 0.08 LandPlants
GSVIVT01028044001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.08 LandPlants
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.05 LandPlants
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.07 LandPlants
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.04 LandPlants
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.09 LandPlants
LOC_Os02g10300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 LandPlants
LOC_Os06g35300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 LandPlants
LOC_Os06g35370.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 LandPlants
Solyc01g066070.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.11 LandPlants
Solyc06g009200.3.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.11 LandPlants
Solyc07g044870.4.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.03 LandPlants
Zm00001e014066_P002 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 LandPlants
Zm00001e025021_P003 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.13 LandPlants
Zm00001e026354_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 LandPlants
Zm00001e030524_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 LandPlants
Zm00001e030525_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 LandPlants
Zm00001e030528_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 LandPlants
Zm00001e030529_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 LandPlants
Zm00001e030530_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 LandPlants
Zm00001e030533_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 LandPlants
Zm00001e030534_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 LandPlants
Zm00001e030535_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 LandPlants
Zm00001e030537_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 LandPlants
Zm00001e042494_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 LandPlants
AMTR_s00002p00270640 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.08 SeedPlants
AT1G02790 PGA4 polygalacturonase 4 0.03 SeedPlants
AT3G07820 No alias Pectin lyase-like superfamily protein 0.1 SeedPlants
AT5G48140 No alias Pectin lyase-like superfamily protein 0.05 SeedPlants
GSVIVT01028044001 No alias Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.07 SeedPlants
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.04 SeedPlants
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.07 SeedPlants
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.04 SeedPlants
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.08 SeedPlants
LOC_Os02g10300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 SeedPlants
LOC_Os06g35300.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 SeedPlants
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 SeedPlants
LOC_Os06g35370.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 SeedPlants
Solyc01g066070.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.1 SeedPlants
Solyc06g009200.3.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.1 SeedPlants
Solyc07g044870.4.1 No alias Polygalacturonase OS=Nicotiana tabacum... 0.02 SeedPlants
Zm00001e014066_P002 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 SeedPlants
Zm00001e025021_P003 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.11 SeedPlants
Zm00001e026354_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 SeedPlants
Zm00001e030524_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.04 SeedPlants
Zm00001e030525_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.02 SeedPlants
Zm00001e030528_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 SeedPlants
Zm00001e030529_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 SeedPlants
Zm00001e030530_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.04 SeedPlants
Zm00001e030533_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 SeedPlants
Zm00001e030534_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 SeedPlants
Zm00001e030535_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 SeedPlants
Zm00001e030537_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.02 SeedPlants
Zm00001e042494_P001 No alias Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 81 408
No external refs found!