LOC_Os06g34880.1


Description : RING-H2-class E3 ligase


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000003 (LandPlants) Phylogenetic Tree(s): OG_02_0000003_tree ,
OG_03_0002508 (SeedPlants) Phylogenetic Tree(s): OG_03_0002508_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g34880.1
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00161410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT2G18670 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G62690 ATL5 AtL5 0.03 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G33565 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01007975001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01036593001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_28932 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_30879 No alias Probable E3 ubiquitin-protein ligase XERICO... 0.03 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.01 Archaeplastida
Gb_35824 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_39486 No alias RING-H2 finger protein ATL16 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os01g20930.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g37450.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g36310.1 No alias RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os10g42390.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_222729g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_25345g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_377006g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_391931g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_71146g0020 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_711804g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_8338g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_83882g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g19680.1 No alias NEP1-interacting protein-like 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Mp5g08270.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo423895 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
Solyc01g088440.2.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g067680.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g082690.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc06g049030.4.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc06g053640.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc08g076830.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e002233_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e002430_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e011306_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e034829_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AMTR_s00004p00252760 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
AT1G04360 No alias RING/U-box superfamily protein 0.01 LandPlants
AT1G49230 No alias RING/U-box superfamily protein 0.02 LandPlants
AT2G18670 No alias RING/U-box superfamily protein 0.02 LandPlants
AT2G37580 No alias RING/U-box superfamily protein 0.02 LandPlants
AT3G62690 ATL5 AtL5 0.03 LandPlants
AT4G33565 No alias RING/U-box superfamily protein 0.02 LandPlants
AT5G05280 No alias RING/U-box superfamily protein 0.03 LandPlants
AT5G17600 No alias RING/U-box superfamily protein 0.06 LandPlants
GSVIVT01026703001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 LandPlants
LOC_Os01g20930.1 No alias no hits & (original description: none) 0.04 LandPlants
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os02g37450.1 No alias no hits & (original description: none) 0.05 LandPlants
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os05g36310.1 No alias RING-H2 finger protein ATL77 OS=Arabidopsis thaliana... 0.05 LandPlants
LOC_Os10g42390.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_114175g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.04 LandPlants
MA_222729g0010 No alias RING-H2-class E3 ligase 0.01 LandPlants
MA_391931g0010 No alias RING-H2-class E3 ligase 0.01 LandPlants
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_71146g0020 No alias no hits & (original description: none) 0.01 LandPlants
MA_80729g0030 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_8338g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_9143538g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_96368g0010 No alias RING-H2-class E3 ligase 0.01 LandPlants
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 LandPlants
Smo39820 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
Smo8844 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 LandPlants
Solyc04g082690.1.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc06g049030.4.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 LandPlants
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
Solyc08g076830.1.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
Solyc09g066300.3.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.05 LandPlants
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e002233_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e002430_P001 No alias no hits & (original description: none) 0.06 LandPlants
Zm00001e011306_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.04 LandPlants
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.06 LandPlants
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 69 112
No external refs found!