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  5. AMTR_s00074p00110430

AMTR_s00074p00110430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00074.33

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG_01_0000421 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000421_tree ,
OG_02_0000820 (LandPlants) Phylogenetic Tree(s): OG_02_0000820_tree ,
OG_03_0001649 (SeedPlants) Phylogenetic Tree(s): OG_03_0001649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00074p00110430
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
Solyc11g008900.2.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Zm00001e021472_P004 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e039538_P001 No alias C3H zinc finger transcription factor 0.02 Archaeplastida
Gb_17764 No alias C3H zinc finger transcription factor 0.02 LandPlants
LOC_Os12g21700.1 No alias C3H zinc finger transcription factor 0.02 LandPlants
Solyc11g008900.2.1 No alias C3H zinc finger transcription factor 0.02 LandPlants
Zm00001e021472_P004 No alias no hits & (original description: none) 0.02 LandPlants
GSVIVT01019118001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 SeedPlants
Gb_17764 No alias C3H zinc finger transcription factor 0.02 SeedPlants
Gb_32583 No alias C3H zinc finger transcription factor 0.02 SeedPlants
Gb_39550 No alias C3H zinc finger transcription factor 0.02 SeedPlants
MA_1139g0010 No alias C3H zinc finger transcription factor 0.02 SeedPlants
MA_557223g0010 No alias C3H zinc finger transcription factor 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 118 142
IPR000571 Znf_CCCH 75 101
IPR000571 Znf_CCCH 163 188
No external refs found!