Zm00001d009122 (GRMZM2G143777)


Aliases : GRMZM2G143777

Description : 27.3.67 RNA.regulation of transcription.putative transcription regulator Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000285 (Gene family) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d009122
Cluster HCCA cluster: Cluster_307

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Gene family
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
GSVIVT01002065001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
GSVIVT01014363001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.07 Gene family
LOC_Os01g19490 Os01g0301000 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
LOC_Os07g40750 Os07g0598500 27.3.67 RNA.regulation of transcription.putative... 0.08 Gene family
LOC_Os12g34340 Os12g0527900 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
MA_29755g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.01 Gene family
MA_480698g0010 No alias No description available 0.02 Gene family
MA_7558g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
MA_777619g0010 No alias 27.3.67 RNA.regulation of transcription.putative... 0.01 Gene family
Solyc02g078330.3.1 Solyc02g078330.3 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
Solyc06g005140.3.1 Solyc06g005140.3 No description available 0.07 Gene family
Solyc07g054100.2.1 Solyc07g054100.2 27.3.67 RNA.regulation of transcription.putative... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 257 282
IPR002885 Pentatricopeptide_repeat 152 181
IPR002885 Pentatricopeptide_repeat 365 391
IPR002885 Pentatricopeptide_repeat 189 231
No external refs found!