AMTR_s00004p00093740 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.76

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component


Gene families : OG_01_0003160 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003160_tree ,
OG_02_0005838 (LandPlants) Phylogenetic Tree(s): OG_02_0005838_tree ,
OG_03_0006770 (SeedPlants) Phylogenetic Tree(s): OG_03_0006770_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00093740
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.05 Archaeplastida
Cre04.g227350 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 Archaeplastida
LOC_Os03g44900.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 Archaeplastida
MA_16801g0010 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.03 Archaeplastida
Solyc12g019860.2.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.06 Archaeplastida
Zm00001e005243_P002 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.04 Archaeplastida
Zm00001e012376_P003 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.08 Archaeplastida
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.04 LandPlants
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 LandPlants
LOC_Os03g44900.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 LandPlants
Mp5g06180.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 LandPlants
Pp3c8_22460V3.1 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.02 LandPlants
Solyc12g019860.2.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 LandPlants
Zm00001e005243_P002 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 LandPlants
Zm00001e012376_P003 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.07 LandPlants
AT5G18230 No alias transcription regulator NOT2/NOT3/NOT5 family protein 0.04 SeedPlants
GSVIVT01033382001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 SeedPlants
LOC_Os03g44900.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 SeedPlants
MA_16801g0010 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.01 SeedPlants
Solyc12g019860.2.1 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.05 SeedPlants
Zm00001e005243_P002 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.02 SeedPlants
Zm00001e012376_P003 No alias component NOT3/5 of mRNA deadenylation CCR4-NOT complex 0.07 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007282 NOT2/3/5_C 761 895
IPR007207 Not_N 3 237
No external refs found!