AMTR_s00004p00092300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.75

Description : RNA biosynthesis.RNA polymerase III-dependent transcription.TFIIIb transcription factor complex.BRF1 component


Gene families : OG_01_0003853 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003853_tree ,
OG_02_0004132 (LandPlants) Phylogenetic Tree(s): OG_02_0004132_tree ,
OG_03_0004133 (SeedPlants) Phylogenetic Tree(s): OG_03_0004133_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00092300
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029946001 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 Archaeplastida
LOC_Os05g23940.1 No alias component BRF1 of TFIIIb transcription factor complex 0.02 Archaeplastida
Solyc01g088720.3.1 No alias component BRF1 of TFIIIb transcription factor complex 0.03 Archaeplastida
Zm00001e026415_P001 No alias No annotation 0.02 Archaeplastida
LOC_Os05g23940.1 No alias component BRF1 of TFIIIb transcription factor complex 0.02 LandPlants
LOC_Os05g23940.1 No alias component BRF1 of TFIIIb transcription factor complex 0.02 SeedPlants
Solyc01g088720.3.1 No alias component BRF1 of TFIIIb transcription factor complex 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0017025 TBP-class protein binding IEA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011665 BRF1_TBP-bd_dom 489 607
IPR013150 TFIIB_cyclin 204 264
IPR013150 TFIIB_cyclin 96 148
No external refs found!