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  5. LOC_Os06g12400.1

LOC_Os06g12400.1


Description : transcription factor (PHD)


Gene families : OG_01_0001716 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001716_tree ,
OG_02_0001846 (LandPlants) Phylogenetic Tree(s): OG_02_0001846_tree ,
OG_03_0001493 (SeedPlants) Phylogenetic Tree(s): OG_03_0001493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g12400.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT3G19510 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc... 0.04 Archaeplastida
GSVIVT01037894001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
Mp4g02060.1 No alias transcription factor (PHD) 0.07 Archaeplastida
Solyc07g008730.2.1 No alias transcription factor (PHD) 0.03 Archaeplastida
Zm00001e019808_P001 No alias transcription factor (PHD) 0.04 Archaeplastida
Zm00001e029056_P003 No alias transcription factor (PHD) 0.05 Archaeplastida
Zm00001e032229_P002 No alias transcription factor (PHD) 0.02 Archaeplastida
AMTR_s00001p00272780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
AT3G19510 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc... 0.02 LandPlants
GSVIVT01037894001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 LandPlants
Mp4g02060.1 No alias transcription factor (PHD) 0.05 LandPlants
Pp3c3_29290V3.1 No alias pathogenesis related homeodomain protein A 0.01 LandPlants
Zm00001e032229_P002 No alias transcription factor (PHD) 0.02 LandPlants
AMTR_s00001p00272780 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 SeedPlants
AT3G19510 HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc... 0.02 SeedPlants
GSVIVT01037894001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 SeedPlants
Zm00001e032229_P002 No alias transcription factor (PHD) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 246 301
IPR001356 Homeobox_dom 622 662
No external refs found!