LOC_Os06g12080.1

Description : transcription factor (mTERF)

Gene families : OG_01_0000097 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000097_tree ,
OG_02_0000048 (LandPlants) Phylogenetic Tree(s): OG_02_0000048_tree ,
OG_03_0000021 (SeedPlants) Phylogenetic Tree(s): OG_03_0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g12080.1
Cluster	HCCA: Cluster_291

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00235420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.01	Archaeplastida
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s01293p00010460	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01017772001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Gb_00751	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_06120	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	Archaeplastida
Gb_12368	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Gb_12969	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_14091	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_24665	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_26175	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Gb_26176	No alias	transcription factor (mTERF)	0.05	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	Archaeplastida
MA_31885g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_508g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_714651g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Zm00001e031638_P001	No alias	transcription factor (mTERF)	0.04	Archaeplastida
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	LandPlants
AMTR_s00010p00224530	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00235420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.01	LandPlants
AMTR_s00010p00237160	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00010p00239860	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	LandPlants
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	LandPlants
AT1G21150	No alias	Mitochondrial transcription termination factor family protein	0.02	LandPlants
GSVIVT01017772001	No alias	RNA biosynthesis.organelle...	0.02	LandPlants
GSVIVT01036787001	No alias	RNA biosynthesis.organelle...	0.02	LandPlants
Gb_00751	No alias	transcription factor (mTERF)	0.01	LandPlants
Gb_12368	No alias	transcription factor (mTERF)	0.04	LandPlants
Gb_12969	No alias	transcription factor (mTERF)	0.02	LandPlants
Gb_24665	No alias	transcription factor (mTERF)	0.03	LandPlants
Gb_26175	No alias	transcription factor (mTERF)	0.04	LandPlants
Gb_26176	No alias	transcription factor (mTERF)	0.04	LandPlants
Gb_26213	No alias	transcription factor (mTERF)	0.01	LandPlants
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	LandPlants
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	LandPlants
MA_31885g0010	No alias	transcription factor (mTERF)	0.01	LandPlants
MA_714651g0010	No alias	transcription factor (mTERF)	0.02	LandPlants
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	LandPlants
Zm00001e013884_P001	No alias	transcription factor (mTERF)	0.02	LandPlants
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.04	LandPlants
Zm00001e031638_P001	No alias	transcription factor (mTERF)	0.04	LandPlants
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00224530	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.01	SeedPlants
AMTR_s00010p00237160	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00010p00239860	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	SeedPlants
GSVIVT01017772001	No alias	RNA biosynthesis.organelle...	0.02	SeedPlants
Gb_00751	No alias	transcription factor (mTERF)	0.01	SeedPlants
Gb_12368	No alias	transcription factor (mTERF)	0.02	SeedPlants
Gb_12969	No alias	transcription factor (mTERF)	0.02	SeedPlants
Gb_24665	No alias	transcription factor (mTERF)	0.02	SeedPlants
Gb_26175	No alias	transcription factor (mTERF)	0.04	SeedPlants
Gb_26176	No alias	transcription factor (mTERF)	0.03	SeedPlants
Gb_26213	No alias	transcription factor (mTERF)	0.01	SeedPlants
MA_122549g0010	No alias	transcription factor (mTERF)	0.01	SeedPlants
MA_192398g0010	No alias	transcription factor (mTERF)	0.02	SeedPlants
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	SeedPlants
MA_33244g0010	No alias	transcription factor (mTERF)	0.01	SeedPlants
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	SeedPlants
MA_86824g0010	No alias	transcription factor (mTERF)	0.01	SeedPlants
Zm00001e013884_P001	No alias	transcription factor (mTERF)	0.02	SeedPlants
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.04	SeedPlants
Zm00001e031638_P001	No alias	transcription factor (mTERF)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003690	MTERF	81	350

External Links

No external refs found!

LOC_Os06g12080.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation