LOC_Os06g11330.1


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0004419 (LandPlants) Phylogenetic Tree(s): OG_02_0004419_tree ,
OG_03_0002756 (SeedPlants) Phylogenetic Tree(s): OG_03_0002756_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g11330.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00228660 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.02 Archaeplastida
AT5G51870 AGL71 AGAMOUS-like 71 0.03 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01010218001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_12778 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
LOC_Os02g49840.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os08g41960.1 No alias transcription factor (MADS/AGL) 0.08 Archaeplastida
MA_101463g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_126898g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_128164g0010 No alias No annotation 0.02 Archaeplastida
MA_133455g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_141872g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_16120g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_19007g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.09 Archaeplastida
MA_45349g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_69370g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_7858089g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Smo85851 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
Solyc01g106170.4.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g089200.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc05g015750.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc05g056620.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.02 Archaeplastida
Solyc08g080100.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc11g028020.3.1 No alias No annotation 0.04 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030187_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e033123_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.13 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.02 LandPlants
GSVIVT01001701001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 LandPlants
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 LandPlants
GSVIVT01011300001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.09 LandPlants
GSVIVT01015641001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 LandPlants
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.06 LandPlants
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.12 LandPlants
AT4G24540 AGL24 AGAMOUS-like 24 0.02 SeedPlants
GSVIVT01001701001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 SeedPlants
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 SeedPlants
GSVIVT01011300001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.09 SeedPlants
GSVIVT01015641001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 SeedPlants
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.12 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 88 149
No external refs found!