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  5. LOC_Os06g10620.1

LOC_Os06g10620.1


Description : component SPT5 of SPT4/5 transcription elongation factor complex


Gene families : OG_01_0001535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001535_tree ,
OG_02_0002332 (LandPlants) Phylogenetic Tree(s): OG_02_0002332_tree ,
OG_03_0003310 (SeedPlants) Phylogenetic Tree(s): OG_03_0003310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g10620.1
Cluster HCCA: Cluster_382

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00250180 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
AMTR_s00002p00251130 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
Cre01.g031050 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
GSVIVT01010022001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.03 Archaeplastida
Pp3c16_360V3.1 No alias global transcription factor group A2 0.05 Archaeplastida
Pp3c25_8110V3.1 No alias global transcription factor group A2 0.02 Archaeplastida
Smo449156 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 Archaeplastida
Solyc11g008150.3.1 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 Archaeplastida
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 Archaeplastida
Zm00001e032078_P001 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 Archaeplastida
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.08 Archaeplastida
AMTR_s00002p00250180 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 LandPlants
GSVIVT01010022001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 LandPlants
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.02 LandPlants
Pp3c16_360V3.1 No alias global transcription factor group A2 0.04 LandPlants
Pp3c25_8110V3.1 No alias global transcription factor group A2 0.02 LandPlants
Smo449156 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 LandPlants
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 LandPlants
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 LandPlants
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.07 LandPlants
AMTR_s00002p00250180 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 SeedPlants
GSVIVT01010022001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 SeedPlants
MA_10434986g0010 No alias RNA polymerase-V auxiliary factor (KTF1/SPT5L).... 0.02 SeedPlants
Solyc04g064700.4.1 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.02 SeedPlants
Zm00001e030789_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.03 SeedPlants
Zm00001e036210_P001 No alias component SPT5 of SPT4/5 transcription elongation factor complex 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005824 KOW 199 226
No external refs found!