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  5. AMTR_s00072p00157670

AMTR_s00072p00157670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00072.97

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component


Gene families : OG_01_0005157 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005157_tree ,
OG_02_0006213 (LandPlants) Phylogenetic Tree(s): OG_02_0006213_tree ,
OG_03_0005788 (SeedPlants) Phylogenetic Tree(s): OG_03_0005788_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00072p00157670
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT5G14520 No alias pescadillo-related 0.13 Archaeplastida
Cpa|evm.model.tig00020961.62 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Cre16.g683793 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
GSVIVT01032412001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Gb_12407 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.08 Archaeplastida
LOC_Os03g49210.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Archaeplastida
Pp3c3_23250V3.1 No alias pescadillo-related 0.06 Archaeplastida
Smo166421 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Solyc07g047670.3.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.06 Archaeplastida
Zm00001e005354_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
AT5G14520 No alias pescadillo-related 0.13 LandPlants
GSVIVT01032412001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 LandPlants
Gb_12407 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.07 LandPlants
LOC_Os03g49210.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.02 LandPlants
Pp3c3_23250V3.1 No alias pescadillo-related 0.06 LandPlants
Smo166421 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 LandPlants
Solyc07g047670.3.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.04 LandPlants
Zm00001e005354_P001 No alias no hits & (original description: none) 0.08 LandPlants
AT5G14520 No alias pescadillo-related 0.13 SeedPlants
GSVIVT01032412001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 SeedPlants
Gb_12407 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.07 SeedPlants
LOC_Os03g49210.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.02 SeedPlants
Solyc07g047670.3.1 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.04 SeedPlants
Zm00001e005354_P001 No alias no hits & (original description: none) 0.08 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001357 BRCT_dom 343 416
IPR010613 PES 10 279
No external refs found!