LOC_Os05g50930.1


Description : basal transcription factor (Sigma)


Gene families : OG_01_0000365 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000365_tree ,
OG_02_0006432 (LandPlants) Phylogenetic Tree(s): OG_02_0006432_tree ,
OG_03_0007444 (SeedPlants) Phylogenetic Tree(s): OG_03_0007444_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g50930.1
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257610 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00009p00072720 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00011p00266100 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00025p00248060 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00056p00209700 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AT1G64860 SIGB, SIG2,... sigma factor A 0.14 Archaeplastida
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.02 Archaeplastida
AT3G53920 SIGC, SIG3 RNApolymerase sigma-subunit C 0.03 Archaeplastida
AT5G13730 SIGD, SIG4 sigma factor 4 0.04 Archaeplastida
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.09 Archaeplastida
Cre03.g194950 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
GSVIVT01024261001 No alias RNA biosynthesis.organelle... 0.08 Archaeplastida
GSVIVT01025717001 No alias RNA biosynthesis.organelle... 0.04 Archaeplastida
GSVIVT01028717001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
GSVIVT01032193001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
GSVIVT01035330001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
Gb_03878 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Gb_37602 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Gb_40730 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
MA_10429585g0010 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
MA_137876g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp3g02240.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Mp7g15030.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Pp3c14_4440V3.1 No alias sigma factor A 0.03 Archaeplastida
Pp3c1_36580V3.1 No alias RNApolymerase sigma subunit 2 0.01 Archaeplastida
Pp3c22_18520V3.1 No alias sigma factor E 0.06 Archaeplastida
Pp3c2_5110V3.1 No alias RNApolymerase sigma subunit 2 0.01 Archaeplastida
Smo117159 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
Smo147096 No alias RNA biosynthesis.organelle... 0.08 Archaeplastida
Solyc03g007370.3.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Solyc06g072710.3.1 No alias basal transcription factor (Sigma) 0.08 Archaeplastida
Zm00001e001198_P005 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Zm00001e011616_P008 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Zm00001e021683_P001 No alias basal transcription factor (Sigma) 0.05 Archaeplastida
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.09 Archaeplastida
Zm00001e040174_P003 No alias no hits & (original description: none) 0.05 Archaeplastida
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 LandPlants
AMTR_s00015p00253000 evm_27.TU.AmTr_v1... RNA polymerase sigma factor sigE,... 0.06 LandPlants
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.07 LandPlants
GSVIVT01028717001 No alias RNA biosynthesis.organelle... 0.02 LandPlants
Gb_40730 No alias basal transcription factor (Sigma) 0.03 LandPlants
Mp3g02240.1 No alias basal transcription factor (Sigma) 0.02 LandPlants
Pp3c22_18520V3.1 No alias sigma factor E 0.05 LandPlants
Smo147096 No alias RNA biosynthesis.organelle... 0.04 LandPlants
Solyc03g007370.3.1 No alias basal transcription factor (Sigma) 0.03 LandPlants
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.08 LandPlants
AMTR_s00015p00252960 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 SeedPlants
AMTR_s00015p00253000 evm_27.TU.AmTr_v1... RNA polymerase sigma factor sigE,... 0.06 SeedPlants
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.06 SeedPlants
GSVIVT01028717001 No alias RNA biosynthesis.organelle... 0.02 SeedPlants
Gb_40730 No alias basal transcription factor (Sigma) 0.03 SeedPlants
Solyc03g007370.3.1 No alias basal transcription factor (Sigma) 0.03 SeedPlants
Zm00001e032596_P002 No alias basal transcription factor (Sigma) 0.08 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 436 489
IPR007624 RNA_pol_sigma70_r3 350 417
IPR007627 RNA_pol_sigma70_r2 267 334
No external refs found!