LOC_Os05g49610.1


Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG_01_0001104 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001104_tree ,
OG_02_0001147 (LandPlants) Phylogenetic Tree(s): OG_02_0001147_tree ,
OG_03_0002903 (SeedPlants) Phylogenetic Tree(s): OG_03_0002903_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g49610.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00268210 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00014p00229190 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
AMTR_s00033p00133210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 Archaeplastida
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Archaeplastida
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 Archaeplastida
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.02 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.09 Archaeplastida
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 LandPlants
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 LandPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.06 LandPlants
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.04 LandPlants
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.03 LandPlants
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.06 LandPlants
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.02 LandPlants
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 LandPlants
Pp3c26_560V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.01 LandPlants
Zm00001e000591_P002 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 LandPlants
Zm00001e011811_P001 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays... 0.02 LandPlants
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.08 LandPlants
AMTR_s00021p00241290 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 SeedPlants
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.06 SeedPlants
GSVIVT01027077001 No alias RNA processing.organelle machineries.RNA... 0.06 SeedPlants
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.04 SeedPlants
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.02 SeedPlants
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.04 SeedPlants
Zm00001e011811_P001 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays... 0.02 SeedPlants
Zm00001e026570_P001 No alias WTF1 plastidial RNA basal splicing factor 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021099 PORR_domain 66 393
No external refs found!