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  5. LOC_Os05g48670.1

LOC_Os05g48670.1


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0005934 (SeedPlants) Phylogenetic Tree(s): OG_03_0005934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g48670.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AMTR_s00130p00115490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AT1G76900 AtTLP1, TLP1 tubby like protein 1 0.05 Archaeplastida
AT2G18280 TLP2, AtTLP2 tubby like protein 2 0.04 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.03 Archaeplastida
Cpa|evm.model.tig00020603.38 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01010999001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
Gb_28725 No alias transcription factor (TUB) 0.03 Archaeplastida
Gb_35372 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.06 Archaeplastida
Mp6g01640.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Pp3c8_18450V3.1 No alias tubby like protein 3 0.03 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e024653_P002 No alias transcription factor (TUB) 0.05 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.05 Archaeplastida
Zm00001e037073_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
Mp6g01640.1 No alias transcription factor (TUB) 0.02 LandPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e028052_P001 No alias transcription factor (TUB) 0.05 LandPlants
Zm00001e028052_P001 No alias transcription factor (TUB) 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000007 Tubby_C 135 393
No external refs found!