AMTR_s00004p00074220 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.55

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.GATA transcription factor


Gene families : OG_01_0000094 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000094_tree ,
OG_02_0000055 (LandPlants) Phylogenetic Tree(s): OG_02_0000055_tree ,
OG_03_0000244 (SeedPlants) Phylogenetic Tree(s): OG_03_0000244_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00074220
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT3G20750 GATA29 GATA transcription factor 29 0.03 Archaeplastida
AT5G26930 GATA23 GATA transcription factor 23 0.02 Archaeplastida
Cre10.g435450 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
GSVIVT01035614001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
Gb_24250 No alias transcription factor (GATA) 0.03 Archaeplastida
Gb_25568 No alias transcription factor (GATA) 0.02 Archaeplastida
Gb_34837 No alias transcription factor (GATA) 0.02 Archaeplastida
LOC_Os01g74540.1 No alias transcription factor (GATA) 0.02 Archaeplastida
LOC_Os02g56250.1 No alias transcription factor (GATA) 0.03 Archaeplastida
LOC_Os04g45650.2 No alias transcription factor (GATA) 0.02 Archaeplastida
MA_10436047g0010 No alias transcription factor (GATA) 0.04 Archaeplastida
MA_120821g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_161258g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_18616g0010 No alias transcription factor (GATA) 0.03 Archaeplastida
Mp1g03950.1 No alias transcription factor (GATA) 0.03 Archaeplastida
Pp3c20_22630V3.1 No alias GATA transcription factor 9 0.03 Archaeplastida
Solyc08g066510.3.1 No alias transcription factor (GATA) 0.03 Archaeplastida
Zm00001e005940_P001 No alias transcription factor (GATA) 0.03 Archaeplastida
Zm00001e006272_P001 No alias transcription factor (GATA) 0.03 Archaeplastida
Zm00001e015260_P001 No alias transcription factor (GATA) 0.02 Archaeplastida
Zm00001e017604_P001 No alias transcription factor (GATA) 0.02 Archaeplastida
AT3G20750 GATA29 GATA transcription factor 29 0.03 LandPlants
GSVIVT01035614001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 LandPlants
Gb_24250 No alias transcription factor (GATA) 0.03 LandPlants
Gb_25568 No alias transcription factor (GATA) 0.02 LandPlants
LOC_Os01g74540.1 No alias transcription factor (GATA) 0.02 LandPlants
MA_161258g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_18616g0010 No alias transcription factor (GATA) 0.03 LandPlants
Zm00001e005940_P001 No alias transcription factor (GATA) 0.03 LandPlants
Zm00001e006272_P001 No alias transcription factor (GATA) 0.03 LandPlants
Zm00001e017604_P001 No alias transcription factor (GATA) 0.02 LandPlants
GSVIVT01035614001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
Gb_24250 No alias transcription factor (GATA) 0.03 SeedPlants
LOC_Os05g44400.1 No alias transcription factor (GATA) 0.02 SeedPlants
MA_120821g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_18616g0010 No alias transcription factor (GATA) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000679 Znf_GATA 213 247
No external refs found!