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  5. LOC_Os05g41520.1

LOC_Os05g41520.1


Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 144.0)


Gene families : OG_01_0000041 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000041_tree ,
OG_02_0000046 (LandPlants) Phylogenetic Tree(s): OG_02_0000046_tree ,
OG_03_0001181 (SeedPlants) Phylogenetic Tree(s): OG_03_0001181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g41520.1
Cluster HCCA: Cluster_348

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00012p00250160 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_25302 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c2_5960V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Pp3c7_560V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Zm00001e039308_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_25302 No alias no hits & (original description: none) 0.02 LandPlants
Pp3c7_560V3.1 No alias RING/U-box superfamily protein 0.03 LandPlants
Zm00001e039308_P001 No alias no hits & (original description: none) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 174 216
IPR039525 RNF126-like_zinc-ribbon 6 38
No external refs found!