Zm00001d005149 (GRMZM2G138303)


Aliases : GRMZM2G138303

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d005149
Cluster HCCA cluster: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01000420001 No alias No description available 0.05 Gene family
GSVIVT01008173001 No alias No description available 0.03 Gene family
GSVIVT01011501001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01017763001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01017880001 No alias No description available 0.03 Gene family
GSVIVT01021756001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
GSVIVT01027525001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01028022001 No alias No description available 0.04 Gene family
GSVIVT01032994001 No alias No description available 0.04 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01037562001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os01g60250 Os01g0818200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os02g26940 Os02g0468800 No description available 0.04 Gene family
LOC_Os03g08680 Os03g0185200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
LOC_Os03g16450 Os03g0271300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os03g60690 Os03g0821700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g43430 Os04g0514500 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os06g30940 Os06g0506100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os08g33700 Os08g0434000 No description available 0.05 Gene family
MA_10427342g0010 No alias No description available 0.02 Gene family
MA_10429043g0020 No alias No description available 0.04 Gene family
MA_107356g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
MA_121267g0010 No alias No description available 0.03 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_14659g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_16226g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_252238g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_25584g0010 No alias No description available 0.02 Gene family
MA_27147g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_30949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_3317g0020 No alias No description available 0.04 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_36655g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
MA_656915g0010 No alias No description available 0.02 Gene family
MA_683665g0010 No alias No description available 0.04 Gene family
MA_745151g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_7691g0010 No alias No description available 0.03 Gene family
MA_83898g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_90090g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_97789g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.04 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.04 Gene family
Solyc01g091610.1.1 Solyc01g091610.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc01g100800.2.1 Solyc01g100800.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g088650.1.1 Solyc02g088650.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc02g094480.3.1 Solyc02g094480.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.04 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.03 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.05 Gene family
Solyc03g116843.1.1 Solyc03g116843.1 No description available 0.03 Gene family
Solyc04g016540.2.1 Solyc04g016540.2 No description available 0.04 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.03 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc05g023900.1.1 Solyc05g023900.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc06g062610.2.1 Solyc06g062610.2 No description available 0.02 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.03 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.06 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.03 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.04 Gene family
Solyc11g007230.1.1 Solyc11g007230.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.04 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.04 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d022224 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d043068 GRMZM2G399433 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 534 658
IPR002885 Pentatricopeptide_repeat 156 185
IPR002885 Pentatricopeptide_repeat 435 461
IPR002885 Pentatricopeptide_repeat 360 408
IPR002885 Pentatricopeptide_repeat 258 307
No external refs found!