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  5. LOC_Os05g30010.1

LOC_Os05g30010.1


Description : Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus (sp|c6l7u1|lin1_lotja : 284.0)


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0010935 (LandPlants) Phylogenetic Tree(s): OG_02_0010935_tree ,
OG_03_0010888 (SeedPlants) Phylogenetic Tree(s): OG_03_0010888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30010.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00102360 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula 0.02 Archaeplastida
GSVIVT01009918001 No alias External stimuli response.biotic... 0.03 Archaeplastida
GSVIVT01035145001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 Archaeplastida
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 Archaeplastida
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 Archaeplastida
MA_394030g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_7193588g0010 No alias No annotation 0.04 Archaeplastida
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 Archaeplastida
Zm00001e031427_P002 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.02 LandPlants
GSVIVT01035145001 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.03 LandPlants
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.04 LandPlants
Zm00001e031427_P002 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 LandPlants
Gb_13146 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.01 SeedPlants
Gb_40746 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.01 SeedPlants
Solyc01g066740.3.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1049 1084
No external refs found!