Zm00001d004021 (GRMZM2G027219)


Aliases : GRMZM2G027219

Description : 16.1.4.21 secondary metabolism.isoprenoids.carotenoids.violaxanthin de-epoxidase Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex non-photochemical quenching 1 (NPQ1)


Gene families : OG_01_0008933 (Gene family) Phylogenetic Tree(s): OG0008933_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d004021
Cluster HCCA cluster: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT1G08550 NPQ1, AVDE1 non-photochemical quenching 1 0.03 Gene family
GSVIVT01026405001 No alias 16.1.4.21 secondary... 0.09 Gene family
MA_10426812g0010 No alias 16.1.4.21 secondary... 0.05 Gene family
Solyc04g050930.3.1 Solyc04g050930.3 16.1.4.21 secondary... 0.04 Gene family

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA InterProScan
MF GO:0046422 violaxanthin de-epoxidase activity IEA InterProScan
BP GO:0055114 oxidation-reduction process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010788 VDE 108 348
No external refs found!