LOC_Os05g23960.1


Description : Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana (sp|q9lfl5|pp390_arath : 917.0)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0012119 (LandPlants) Phylogenetic Tree(s): OG_02_0012119_tree ,
OG_03_0012977 (SeedPlants) Phylogenetic Tree(s): OG_03_0012977_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g23960.1
Cluster HCCA: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00090700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
GSVIVT01005577001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
LOC_Os02g09800.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
LOC_Os12g36620.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc08g013850.1.1 No alias RNA editing factor (CRR21) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 330
IPR002885 Pentatricopeptide_repeat 545 592
IPR002885 Pentatricopeptide_repeat 439 489
IPR032867 DYW_dom 718 842
IPR002885 Pentatricopeptide_repeat 187 212
IPR002885 Pentatricopeptide_repeat 410 434
IPR002885 Pentatricopeptide_repeat 519 544
IPR002885 Pentatricopeptide_repeat 154 183
No external refs found!