AMTR_s00071p00058700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.33

Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0009784 (LandPlants) Phylogenetic Tree(s): OG_02_0009784_tree ,
OG_03_0012016 (SeedPlants) Phylogenetic Tree(s): OG_03_0012016_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00058700
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.05 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.04 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.05 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.05 Archaeplastida
AT3G06400 CHR11 chromatin-remodeling protein 11 0.04 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.04 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.02 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00021275.25 No alias Probable chromatin-remodeling complex ATPase chain... 0.01 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01017821001 No alias No description available 0.04 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Gb_15026 No alias chromatin remodeling factor (Alc) 0.04 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
LOC_Os02g02050.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
MA_102992g0010 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.07 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8000029g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9572741g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.06 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.04 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.02 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.02 Archaeplastida
Smo130534 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo164481 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.07 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 LandPlants
MA_8000029g0010 No alias no hits & (original description: none) 0.02 LandPlants
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.01 LandPlants
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 SeedPlants
MA_8000029g0010 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 479 527
IPR000330 SNF2_dom 725 1017
IPR023780 Chromo_domain 624 689
IPR023780 Chromo_domain 567 604
IPR001650 Helicase_C 1074 1153
No external refs found!