Aliases : EMB3011
Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp16 RNA helicase
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cre24.g755347 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G26560 | No alias | ATP-dependent RNA helicase, putative | 0.02 | OrthoFinder output from all 47 species | |
AT5G13010 | EMB3011 | RNA helicase family protein | 0.01 | OrthoFinder output from all 47 species | |
Adi_g078789 | No alias | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g08262 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.01 | OrthoFinder output from all 47 species | |
Aop_g64809 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Aspi01Gene27639.t1 | Aspi01Gene27639 | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene28720.t1 | Aspi01Gene28720 | RNA helicase *(Prp22) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cba_g33796 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.01G059500.1 | Ceric.01G059500 | not classified & original description: pacid=50591809... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000984.27 | ESP3, EMB2733 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021589.28 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g30923 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01028153001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g21732 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Sam_g14599 | No alias | RNA helicase *(Prp16) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Sam_g25079 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g29503 | No alias | RNA helicase *(Prp22) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Smo429199 | No alias | Solute transport.carrier-mediated transport.MFS... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e022095_P001 | ESP3, EMB2733,... | RNA helicase (Prp2) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036358_P005 | Zm00001e036358 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e038305_P001 | Zm00001e038305 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004386 | helicase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003779 | actin binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No external refs found! |